A new synonym-substitution method to enrich the human phenotype
Por um escritor misterioso
Last updated 04 julho 2024
Background Named entity recognition is critical for biomedical text mining, where it is not unusual to find entities labeled by a wide range of different terms. Nowadays, ontologies are one of the crucial enabling technologies in bioinformatics, providing resources for improved natural language processing tasks. However, biomedical ontology-based named entity recognition continues to be a major research problem. Results This paper presents an automated synonym-substitution method to enrich the Human Phenotype Ontology (HPO) with new synonyms. The approach is mainly based on both the lexical properties of the terms and the hierarchical structure of the ontology. By scanning the lexical difference between a term and its descendant terms, the method can learn new names and modifiers in order to generate synonyms for the descendant terms. By searching for the exact phrases in MEDLINE, the method can automatically rule out illogical candidate synonyms. In total, 745 new terms were identified. These terms were indirectly evaluated through the concept annotations on a gold standard corpus and also by document retrieval on a collection of abstracts on hereditary diseases. A moderate improvement in the F-measure performance on the gold standard corpus was observed. Additionally, 6% more abstracts on hereditary diseases were retrieved, and this percentage was 33% higher if only the highly informative concepts were considered. Conclusions A synonym-substitution procedure that leverages the HPO hierarchical structure works well for a reliable and automatic extension of the terminology. The results show that the generated synonyms have a positive impact on concept recognition, mainly those synonyms corresponding to highly informative HPO terms.
PDF) A new synonym-substitution method to enrich the human
The Human Phenotype Ontology: Semantic Unification of Common and
Lexical matching augmented by synonymous word or phrase
Exposing synonymous mutations: Trends in Genetics
Forests, Free Full-Text
PDF) A new synonym-substitution method to enrich the human
Synonymous and non-synonymous substitutions
Occurrence and Nature of Off-Target Modifications by CRISPR-Cas
A new synonym-substitution method to enrich the human phenotype
PNA-Pdx: Versatile Peptide Nucleic Acid-Based Detection of Nucleic
PDF) A new synonym-substitution method to enrich the human
Genetic Code Expansion: A Brief History and Perspective
BioChem, Free Full-Text
A new synonym-substitution method to enrich the human phenotype
Frontiers Differentiation of Glial Cells From hiPSCs: Potential
Recomendado para você
-
Synonyms worksheets04 julho 2024
-
WISIGOTH - user manual04 julho 2024
-
Another Word for “Many” 60+ Synonyms for Many with Useful04 julho 2024
-
11 Synonyms for “Experience” on Your Resume - WordSelector04 julho 2024
-
Synonyms and Antonyms Dictionary -Lesson 23: Contestant (noun)04 julho 2024
-
Firsts and lasts elements of the sorted list of synonym candidates04 julho 2024
-
Synonym Archive - Synonyms for Match: equivalent, compare, go with04 julho 2024
-
Candidate thesaurus relations.04 julho 2024
-
2023 Guide to Using 'Completed' Synonyms in Resumes & More!04 julho 2024
-
Synonyms for Participate To Use on Your Resume04 julho 2024
você pode gostar
-
ALL NEW WORKING UPDATE CODES FOR ALL STAR TOWER DEFENSE 202304 julho 2024
-
Pressfolios Blog on Tumblr04 julho 2024
-
Dead Mount Death Play 9 – Japanese Book Store04 julho 2024
-
Persona 5 Strikers (2021), Switch Game04 julho 2024
-
Lista]21 jogos de sobrevivência para PC. Principais títulos04 julho 2024
-
Bienvenidos Letras de bienvenidos, Patrones de letras, Letras pizarra04 julho 2024
-
anime #manga #somali #somalitomorinokamisama04 julho 2024
-
Árbitro que deu cotovelada em Robertson, do Liverpool, é suspenso04 julho 2024
-
Subway Surfers Game Guide Getting Started - ePub - Compra ebook na04 julho 2024
-
FMF tira final do Mineiro Feminino de grande estádio, reserva data inusitada e desagrada clubes - Superesportes04 julho 2024